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Tag Archives: DNA taxonomy
Discovering Insect Species: DNA magic in Arizona
I got the email from FedEx saying that our package of four plates of 384 PCR samples had arrived at the University of Arizona, where they will be sequenced. These plates contain the DNA from multiple genes from over 120 … Continue reading
Discovering Insect Species: the beetle DNA heads south
In an earlier post, I outlined the steps we took to extract and amplify DNA from the beetles we collected in the Discovering Insect Species field trip to Klamath Marsh. As mentioned, the students extracted DNA from 36 beetles, … Continue reading
Discovering Insect Species: preparing beetle DNA
Over the last couple of weeks in our Discovering Insect Species course we have been processing samples from our Klamath Marsh trip, and worked with the DNA of the beetles. Here’s a bit of what we have done. Extracting the … Continue reading
Posted in Revising Bembidiina, Uncategorized, Z499 (Discovering Insect Species)
Tagged Bembidion, DNA, DNA taxonomy, Trepanedoris
2 Comments
Another surprise in Lionepha
Two days ago I had a post about an unexpected species of Lionepha in the Sierras, of which I became aware when I looked at a specimen that my graduate student John Sproul caught on the South Fork of Bishop … Continue reading
Posted in Revising Bembidiina, Taxonomic Process
Tagged DNA taxonomy, genitalia, Lionepha, Sierra Nevada
1 Comment
A surprise in Lionepha
In the late spring I was in the final stages of a manuscript about the genus Lionepha. This paper will describe the new species I have mentioned earlier, describe the male of Lionepha chintimini for the first time, document DNA … Continue reading
Posted in Fieldwork, Revising Bembidiina, Taxonomic Process
Tagged DNA taxonomy, genitalia, Lionepha, microsculpture
3 Comments
And then there were five…
Earlier this week I spent three lovely days in the Bay Area with Dave Kavanaugh, and on Monday we went to collecting on the slopes of Mount Tamalpais. There, along Cataract Creek, we found a series of small “Bembidion curtulatum” … Continue reading
Posted in Revising Bembidiina, Taxonomic Process
Tagged Bembidion, DNA, DNA taxonomy, Plataphus
3 Comments
Hiding in Plain Sight
In most groups of organisms there are taxa that are very isolated phylogenetically, and are structurally so distinctive that they are easy to recognize (the Australian platypus and Welwitschia mirabilis come to mind). Some of these isolated taxa are considered to … Continue reading
Posted in Revising Bembidiina, Taxonomic Process
Tagged Bembidion, DNA taxonomy, taxonomy, wickhami
4 Comments
Four?
In western North America small, dark Bembidion (Plataphus) are common on gravel river shores. Most of these are called Bembidion curtulatum. They are the smallest members of subgenus Plataphus (sensu Lindroth) in North America, at about 3.5 mm long. As … Continue reading
Posted in Revising Bembidiina, Taxonomic Process
Tagged Bembidion, DNA taxonomy, Plataphus
1 Comment
Delightful DNA
Well, it looks as if Bembidion (Plataphus) curtulatum is at least three species. The above bits of DNA show parts of 28S ribosomal DNA. Of the 950 bases that were sequenced, this shows only those sites that differ from one … Continue reading